Publications:

Fan K, Gökbağ B, Tang S, Li S, Huang Y, Wang L, Cheng L, Li L. Synthetic lethal connectivity and graph transformer improve synthetic lethality prediction. Brief Bioinform. 2024 Jul 25;25(5):bbae425. doi: 10.1093/bib/bbae425. PMID: 39210507; PMCID: PMC11361842.*

Gökbağ B, Tang S, Fan K, Cheng L, Yu L, Zhao Y, Li L. SLKB: synthetic lethality knowledge base. Nucleic Acids Res. 2024 Jan 5;52(D1):D1418-D1428. doi: 10.1093/nar/gkad806. PMID: 37889037; PMCID: PMC10767912.*

Fan K, Tang S, Gökbağ B, Cheng L, Li L. Multi-view graph convolutional network for cancer cell-specific synthetic lethality prediction. Front Genet. 2023 Jan 9;13:1103092. doi: 10.3389/fgene.2022.1103092. PMID: 36699450; PMCID: PMC9868610.

Tang S, Gökbağ B, Fan K, Shao S, Huo Y, Wu X, Cheng L, Li L. Synthetic lethal gene pairs: Experimental approaches and predictive models. Front Genet. 2022 Dec 1;13:961611. doi: 10.3389/fgene.2022.961611. PMID: 36531238; PMCID: PMC9751344.*

Tang S, Wu X, Liu J, Zhang Q, Wang X, Shao S, Gökbağ B, Fan K, Liu X, Li F, Cheng L, Li L. Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs. STAR Protoc. 2022 Aug 24;3(3):101556. doi: 10.1016/j.xpro.2022.101556. PMID: 36060092; PMCID: PMC9428847.

Cheng L, Karkhanis P, Gökbağ B, Liu Y, Li L. DGCyTOF: Deep learning with graphic cluster visualization to predict cell types of single cell mass cytometry data. PLoS Comput Biol. 2022 Apr 11;18(4):e1008885. doi: 10.1371/journal.pcbi.1008885. PMID: 35404970; PMCID: PMC9060369.

Gökbağ B, Knobloch-Westerwick S. Measuring Possible Future Selves: Using Natural Language Processing for Automated Analysis of Posts about Life Concerns. 2020. https://kb.osu.edu/handle/1811/91616*

*: First Author